NIF-Function (formerlly BIRNLex-CogBehavior)
type: Ontology
subject: The BIRN project lexicon+ontology
definition: This ontology contain what was formally known as BIRNLex-CogSenseBehavior version 1.3.1. -- The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. It is built using the organizational framework provided by the foundational Basic Formal Ontology (BFO). It uses an abstract biomedical layer on top of that - OBO-UBO which has been constructed as a proposal to the OBO Foundry. This is meant to support creating a sharable view of core biomedical objects such as biomaterial_entity, and organismal_entity that all biomedical ontologies are likely to need and want to use with the same intended meaning. The BIRNLex-Main.owl ontology imports the several domain specific ontology modues required to construct a formal ontology for the multiscale investigation of neurological disease. This particular module contains entities related to the behavior and cognitive capabilities and actions of organisms (BB:2007-03-05).
creator: The BIRN Ontology Task Force
contributor: Jeff Grethe
contributor: Amarnath Gupta
contributor: Bill Bug
contributor: Jessica Turner
contributor: David Kennedy
contributor: Maryann Martone
contributor: Christine Fennema-Notestine
contributor: Carol Bean
editorial note: The current (2006-10-10) members of the BIRN Ontology Task Force are listed here as the primary curators of the main BIRNLex ontology. Others from within BIRN labs and directly collaborating with BIRN labs have also contributed to specific classes and class properties. Effort is made to provide attribution for each class, where appropriate.
change note: Have 'cleansed' the file to be OWL-DL (v1.2.2).
change note: Processed file with XSLT to remove the explicit DataTypeProperty declarations (v1.2.2)
change note: Now using a specific set of AnnotationProperties that link to specific Enumeration classes to specify annotations from a fixed list of values - e.g., ExternalSource, DefinitionSource. This is the second iteration of this mechanism (first was put in v1.2.2). This second version follows a patter recommended by Alan Ruttenberg which avoids using ObjectProperties as the Manchester design pattern for Value Partitions recommends, and instead sticks to AnnotationProperties only. Note this version of OBO_annotation_properties uses the same EnumerationClasses from v1.2.2, and still includes the related ObjectProperties, so as to be able to support XSLT-based translation of the BIRNLex files that used the v1.2.2 pattern. The next version of this file will eliminate the ObjectProperties and will rename the equivalent AnnotationProperties to remove the trailing '2' put in there to provide a unique name.
change note: Adjusted some disjoints and restrictions, so the the ontology would pass Pellet consistency tests. Adjusted mereological relaions for certain types of memory to link them to appropriate sensory perceptions and behavioral activties (BB: 2007-10-04).
change note: v1.3.0 (2007-08-18) - Changed many things, but primarily: (1) removed rdf:datatype xsd:string specs for all AnnotationProperties, since they are now all untyped and should assume STRING as a the default; (2) added the typing of AnnotationProperties using annotationType which should aid in algorithmically processing; (3) Also updated the XSLT BIRNLex cleanser to clean up more Protege mangling and provide a fixed order for certain properties. This last tool is brittle, as it probably will require continued maintenance to handle more complex OWL constructs than we know have in the file - especially highly nested constructs using class axioms; (4) added use of hasReferenceURLTemplate for linking IDs; (5) Added many more concepts to cover NIF and other BIRN requirements.
change note: Filled out and reconciled the sensory sensation and transduction classes, collating them against UMLS, MeSH, and GO - also adding external IDs for each of those sources.
default language: en
editorial note: next ID: birnlex_15000
editorial note: ID use: 1800 - 1914; 2500 - 2512
imports: BIRNLex-OBO-UBO.owl

Interpretive listening
type: Class
subclass of: Interpretive verbal activity
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Interpretive braille reading
modified date: 2007-03-06
created date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
disjoint with: Interpretive vision based reading

Interpretive verbal activity
type: Class
disjoint with: Generative verbal activity
subclass of: Verbal activity
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-03-06
created date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Restriction
  some values from: Sensory perception
  on property: has part

Interpretive braille reading
type: Class
disjoint with: Interpretive listening
subclass of: Interpretive verbal activity
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
modified date: 2007-03-06
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Interpretive vision based reading
created date: 2007-03-06

Interpretive vision based reading
type: Class
modified date: 2007-03-06
disjoint with: Interpretive listening
disjoint with: Interpretive braille reading
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Interpretive verbal activity

Gustatory system function
type: Class
disjoint with: Somatosensory system function
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
disjoint with: Visual system function
umls cui: C0039336
subclass of: Sensory system function
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
synonym: Taste system function
externally sourced definition: * Taste; the faculty of taste, distinguishing substances by means of the taste buds. (NCI) * The sensation or perception of certain qualities of substances put in the mouth, primarily sweet, sour, salt and bitter. (MSH) * The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells. [GO:ai, http://www.onelook.com/] (GO) * sense effected by the gustatory receptors in the tongue; primarily sweet, sour, salty and bitter. (CSP)
modified date: 2007-08-25
created date: 2007-08-25
disjoint with: Auditory system function
disjoint with: Proprioceptive system function
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
disjoint with: Vestibular system function
editorial note: Though the definition given refers to a disposition toward sensing and processing (which will exist separately in BIRNLex as an occurent), this is the closest definition that captures the sense of a function part of the nervous system. The several other definitions relate more specifically only to the direct sensation component of overall auditory system function.

Somatosensory system function
type: Class
disjoint with: Auditory system function
disjoint with: Proprioceptive system function
disjoint with: Gustatory system function
subclass of: Sensory system function
umls cui: C0682661
modified date: 2007-08-25
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Visual system function
disjoint with: Vestibular system function
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-08-25

Visual system function
type: Class
created date: 2007-08-25
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Vestibular system function
disjoint with: Proprioceptive system function
disjoint with: Auditory system function
umls cui: C0042789
modified date: 2007-08-25
subclass of: Sensory system function
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
disjoint with: Gustatory system function
disjoint with: Somatosensory system function

Sensory system function
type: Class
subclass of: Nervous system function
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
temp definition: Sensory system functions consist of the variety of capabilities for transducing external stimuli into internal receptive signals for which the organism's nervous system is the primary enabling organ system. As such sensory functions can be said to inhere in the nervous system. Sensory system functions usual lead through the action of complex nervous system circuitry to higher level cognitive perception such as a visual image, a smell, a taste, etc.
disjoint with: Autonomic nervous system function
disjoint with: Behavioral system function
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-08-25
modified date: 2007-08-25
umls cui: C0423552

Auditory system function
type: Class
subclass of: Sensory system function
disjoint with: Gustatory system function
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
modified date: 2007-08-25
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
disjoint with: Somatosensory system function
externally sourced definition: process whereby auditory stimuli are selected, organized and interpreted by the organism. (CSP)
editorial note: Though the CSP definition given refers to a process (which will exist separately in BIRNLex as an occurent), this is the closest definition that captures the sense of a function part of the nervous system. The several other definitions relate more specifically only to the direct sensation component of overall auditory system function.
disjoint with: Visual system function
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Vestibular system function
created date: 2007-08-25
umls cui: C0018767
disjoint with: Proprioceptive system function

Proprioceptive system function
type: Class
disjoint with: Auditory system function
created date: 2007-08-25
modified date: 2007-08-25
disjoint with: Vestibular system function
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Somatosensory system function
disjoint with: Visual system function
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Sensory system function
disjoint with: Gustatory system function

Vestibular system function
type: Class
disjoint with: Somatosensory system function
disjoint with: Auditory system function
subclass of: Sensory system function
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Gustatory system function
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
disjoint with: Proprioceptive system function
modified date: 2007-08-25
created date: 2007-08-25
disjoint with: Visual system function

Kinesthetic system function
type: Class
modified date: 2007-08-25
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
externally sourced definition: Provides for the sense of body position and movement (limb and joint position). (CSP)
created date: 2007-08-25
subclass of: Proprioceptive system function

Chemical sensation
type: Class
disjoint with: Electrical sensation
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Photo sensation
disjoint with: Somatic sensation
created date: 2007-08-22
umls cui: C1154586
disjoint with: OrEquilibrioception sensation
synonym: chemosensory perception
nif ID: _8.1_1.2
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
disjoint with: Auditory sensation
externally sourced definition: The series of events required for an organism to receive a sensory chemical stimulus, convert it to a molecular signal, and recognize and characterize the signal.
modified date: 2007-08-22
disjoint with: Magnetic sensation
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Sensory perception

Electrical sensation
type: Class
disjoint with: Photo sensation
disjoint with: Chemical sensation
g oid: 0050964
disjoint with: Auditory sensation
subclass of: Sensory perception
disjoint with: Magnetic sensation
modified date: 2008-03-13
disjoint with: OrEquilibrioception sensation
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
synonym: Electrical sense perception
umls cui: C1327497
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Somatic sensation
synonym: electroception
created date: 2007-08-22
externally sourced definition: The series of events required for an organism to receive a sensory electrical stimulus, convert it to a molecular signal, and recognize and characterize the signal.
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource

Photo sensation
type: Class
disjoint with: Electrical sensation
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
disjoint with: Somatic sensation
umls cui: C1655408
disjoint with: OrEquilibrioception sensation
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
disjoint with: Chemical sensation
synonym: Photo perception
created date: 2007-08-22
subclass of: Sensory perception
modified date: 2007-08-22
disjoint with: Magnetic sensation
externally sourced definition: The series of events in which a sensory light stimulus is received and converted into a molecular signal.
synonym: sensory transduction of light stimulus
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Auditory sensation

Somatic sensation
type: Class
created date: 2007-08-22
disjoint with: Magnetic sensation
disjoint with: OrEquilibrioception sensation
synonym: Somatic perception
modified date: 2007-08-22
disjoint with: Electrical sensation
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
disjoint with: Auditory sensation
umls cui: C0234209
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Photo sensation
subclass of: Sensory perception
externally sourced definition: consciousness of having a body. (CSP)
nif ID: _8.1_1.4
disjoint with: Chemical sensation
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

OrEquilibrioception sensation
type: Class
disjoint with: Chemical sensation
g oid: 0050973
externally sourced definition: The series of events required for an organism to receive an orientational stimulus, convert it to a molecular signal, and recognize and characterize the signal. Equilibrioception refers to a combination of processes by which an organism can perceive its orientation with respect to gravity. In animals, stimuli come from labyrinth system of the inner ears, monitoring the direction of motion; visual stimuli, with information on orientation and motion; pressure receptors, which tell the organism which body surfaces are in contact with the ground; and proprioceptive cues, which report which parts of the body are in motion. [http://www.medterms.com, http://www.onelook.com/]
disjoint with: Photo sensation
disjoint with: Magnetic sensation
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Sensory perception
umls cui: C0678902
created date: 2007-08-22
modified date: 2008-03-13
synonym: Orientation relative to gravity perception
synonym: Orientation relative to gravity sensation
disjoint with: Somatic sensation
synonym: Equilibrioception perception
mesh uid: D018466
disjoint with: Auditory sensation
disjoint with: Electrical sensation
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
umls cui: C1327474
label: Equilibrioception sensation

Auditory sensation
type: Class
mesh uid: D001307
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
externally sourced definition: * The auditory faculty, the perception of sound by the ear. (NCI) * The perception of sound by the ears. (OMS) * The sensation of sound. (MSH) * The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound. [GO:ai] (GO) * process whereby auditory stimuli are selected, organized and interpreted by the organism. (CSP) * sensation of sound. (CSP)
synonym: audition
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
umls cui: C0018767
subclass of: Sound sensation
modified date: 2008-03-13
g oid: 0050910
disjoint with: OrEquilibrioception sensation
disjoint with: Electrical sensation
synonym: hearing
synonym: hearing sensation
disjoint with: Somatic sensation
disjoint with: Chemical sensation
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
synonym: auditory perception
nif ID: _8.1_1.1
disjoint with: Photo sensation
created date: 2007-08-22
disjoint with: Magnetic sensation

Magnetic sensation
type: Class
created date: 2007-08-22
synonym: Magnetic sense perception
modified date: 2007-08-22
synonym: magnetoreception
disjoint with: Chemical sensation
disjoint with: Somatic sensation
disjoint with: Electrical sensation
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
umls cui: C1327477
disjoint with: Auditory sensation
disjoint with: Photo sensation
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: OrEquilibrioception sensation
subclass of: Sensory perception
synonym: magnetoception
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#Wikipedia_defSource
externally sourced definition: The series of events required for an organism to receive a stimulus relating to a magnetic field, convert it to a molecular signal, and recognize and characterize the signal. Stimuli may be chemical, mechanical or electrical and interpreting these stimuli allows an organism to determine the orientation of a magnetic field. Magnetoreception also involves the perception of light; birds cannot orient without the presence of short wavelength (blue/green) light
g oid: 0050958

Sensory perception
type: Class
disjoint with: Sensory stimulus transduction
synonym: feeling
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
editorial note: The disposition to perceive sensory stimuli is used within BIRNLex to fully define the context for stimulus-triggered behavioral or neurophysiological activity, such as stimulus-triggered functional imaging studies. They will also be used to specify the type of sensory system a stimuli given in a protocol is designed to affect (BB).
nif ID: _4_1.5
synonym: aesthesia
synonym: sensation
synonym: esthesia
disjoint with: Behavioral activity
umls cui: C0036658
created date: 2007-08-22
subclass of: Disposition
disjoint with: Cognitive state
modified date: 2007-08-22
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Attention
type: Class
created date: 2006-05-15
modified date: 2007-03-05
subclass of: Cognitive process
disjoint with: Memory
umls cui: C0004268
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Jessica_Turner
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
externally sourced definition: The process of focusing on certain aspects of current experience to the exclusion of others. It is the act of heeding or taking notice or concentrating. (MeSH)
has external source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#MeSH-UMLS

Cognitive process
type: Class
subclass of: Behavioral process
umls cui: C0871689
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS
created date: 2006-05-15
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
modified date: 2007-08-22
umls cui: C0025361
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#BIRN_OTF
externally sourced definition: * Conceptual functions or thinking in all its forms. (MSH) * Conceptual functions or thinking in all its forms. (NCI) (NCI) * conceptual functions or thinking in all its forms. (CSP) * Mental processes involved in the acquisition, processing, and utilization of knowledge or information. (PSY)

Memory
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Jessica_Turner
birnlex definition: The cognitive process of encoding, storing and retrieving past experience
created date: 2006-05-15
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
subclass of: Cognitive process
umls cui: C0679052
umls cui: C0025260
modified date: 2007-08-22
externally sourced definition: * Complex mental function having four distinct phases: (1) memorizing or learning, (2) retention, (3) recall, and (4) recognition. Clinically, it is usually subdivided into immediate, recent, and remote memory. (MSH) * Memory; the power of retaining and recalling past experience, something that is remembered. (NCI) * The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task). [http://cancerweb.ncl.ac.uk/, http://www.onelook.com/, ISBN:0582227089] (GO) * mental function underlying learning; one model specifies 4 phases: acquisition, retention, recall, and recognition. (CSP)
disjoint with: Attention
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Motor activity
type: Class
externally sourced definition: * Any form of exercise or movement. Physical activity may include planned activity such as walking, running, basketball, or other sports. Physical activity may also include other daily activities such as household chores, yard work, walking the dog, etc. (from NIDDK Glossary; http://www.niddk.nih.gov/health/nutrit/pubs/glossary/glossaryintro.htm) (NCI) * State or quality of body actions in daily living. (OMS) * The physical activity of a human or an animal as a behavioral phenomenon. (MSH)
modified date: 2007-08-22
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
umls cui: C0474393
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-08-22
umls cui: C0026606
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Behavioral activity

Behavioral activity
type: Class
editorial note: This seems a bit contrived but appears to be an appropriate way to classify the sub-classes of behavioral activity derived from this class. These certainly are dispositions inhering in the entity performing the activity. There are also many behavioral activities where it really is a non-sequetor to call them behavioral functions - e.g., 'smoking' is certainly a behavior, but it really makes little sense to represent a 'smoking function' and underlying 'smoking process.' Describing behavior as an activity to which an entity is disposed makes it possible to represent very complex behaviors for which the corresponding behavioral function(s) and underlying process(es) are not yet characterized. Note also that one can describe the activity without proscribing the associated function and underlying process - e.g., ants and humans can both be said to be disposed toward expressing 'locomotive behavior', and, yet, the associated 'locomotor function' and underlying 'locomotor process' in each organism is very different. Note also that behavior in general is not restricted to organic 'living' entities but can also be expressed by 'non-living' entities such as the old 'bobbing bird' toy or an automatic loom. Specific entities may have specific dispositions for expressing certain sets of behavioral activities (BB:2007-03-05).
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
disjoint with: Sensory perception
temp definition: Overt activity inhering in the action of instantiating a behavioral function. In other words, the expressed activity resulting from the action of the behavioral process which makes up a given behavioral function (BB: 2007-03-05).
umls cui: C0004927
usage note: These descriptions of activity are intended to be used to represent behavior at the level of organism, typically engaging complex brain circuitry, multple brain regions, and complex effector systems. It is not intended for descriptions of single cell activity.
created date: 2007-03-06
modified date: 2007-08-22
disjoint with: Cognitive state
change note: The has_integral_part restriction can be used to define complex activities that include a specific sensory component, such as a stimulus-triggered type of activity, where the stimulus targets one or more sensory modalities This restriction is not required or defining, but it declares what other continuants can be associated with a type of behavioral activity to create more complex activities. Right now, that is limited to sensory perception associated with a particular sensory stimulus. It's possible this is not quite the right type of obo_ro mereological relation, but it seemed like an appropriate start. When a sensory perception is involved in an activity, it would be hard to refer to that disposition as a proper_part, though possibly this should just fall back to the more generic obo_ro:part_of (BB).
disjoint with: Sensory stimulus transduction
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
subclass of: Disposition
externally sourced definition: * Behavior; the actions or reactions of an object or organism, usually in relation to the environment or surrounding world of stimuli. (NCI) * Conceptually broad term referring to any or all aspects of human or animal behavior. Use a more specific term if possible. (PSY) * The conscious tendency to act, usually an aspect of mental process. (NCI) * The observable response a person makes to any situation. (MSH) * The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions. [ISBN:0395448956, WB:ems] (GO) * human or animal activity studied in terms of motivation, direction, result, emotion, perception, or etiology. (CSP)

Sympathetic nervous system function
type: Class
disjoint with: Parasympathetic nervous system function
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
modified date: 2007-08-25
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-08-25
subclass of: Autonomic nervous system function

Parasympathetic nervous system function
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Autonomic nervous system function
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-08-25
created date: 2007-08-25
disjoint with: Sympathetic nervous system function

Autonomic nervous system function
type: Class
nif ID: _8.1_2
disjoint with: Behavioral system function
modified date: 2007-08-25
subclass of: Nervous system function
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-08-25
disjoint with: Sensory system function

Generative memory activity
type: Class
subclass of: Memory-driven activity
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
birnlex definition: A behavioral activity which when expressed entails the generation and use of stored memories (BB:2008-03-13).
editorial note: This may not be the optimal asserted classification for these extensions (BB:2008-03-13).
modified date: 2008-03-13
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2008-03-13

Memory-driven activity
type: Class
birnlex definition: A behavioral activity which when expressed entails the generation and/or use of stored memories (BB:2008-03-13).
modified date: 2008-03-13
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Behavioral activity
created date: 2008-03-13
editorial note: This may not be the optimal asserted classification for these extensions (BB:2008-03-13).

Spatial memory
type: Class
umls cui: C0814087
modified date: 2007-08-22
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Memory
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-08-22

Memory
type: Class
has external source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS
umls cui: C0935620
modified date: 2007-08-22
scope note: Need to develop a means of using ObjectProperties to define short-term and long-term memory.
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Cognitive state
created date: 2007-08-22
editorial note: The has_integral_part restriction can be used to create very specific Memory extensions based on the sensation(s) and activity(s) the memory entails (BB).
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Restriction
  all values from: Class
    union of: Sensory perception
    union of: Behavioral activity
  on property: has part
editorial note: These are problematic and imply a certain amount of multiple inheritance - e.g., there can be an instance of a memory that is both a Remote memory and an Autobiographical memory. Trying to cover the distinct types of memory covered in UMLS mostly derived from PsychInfo (BB).
disjoint with: Emotion

Cold sensation
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2008-03-13
definition: The series of events in which a sensory cold stimulus is converted into a percieved senstation. (BB:2008-03-13)
modified date: 2008-03-13
subclass of: Temperature sensation
umls cui: C0234192

Temperature sensation
type: Class
mesh uid: D013697
disjoint with: Proprioception
disjoint with: Pain sensation
modified date: 2008-03-13
g oid: 0050951
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
umls cui: C1655407
subclass of: Somatic sensation
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
synonym: thermoception
externally sourced definition: * The sensation of cold, heat, coolness, and warmth. (MSH) * The series of events required for an organism to receive a temperature stimulus, convert it to a molecular signal, and recognize and characterize the signal. Thermoception in larger animals is mainly done in the skin; mammals have at least two types of sensor, for detecting heat (temperatures above body temperature) and cold (temperatures below body temperature). [GO:ai, http://www.wikipedia.org/] (GO) * sensation of temperature. (CSP)
disjoint with: Touch sensation
synonym: Temperature perception
disjoint with: Visceral sensation
created date: 2007-08-22
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Pain sensation
type: Class
created date: 2007-08-22
nif ID: _8.1_1.4.3
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
subclass of: Somatic sensation
umls cui: C0234194
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
disjoint with: Visceral sensation
disjoint with: Temperature sensation
synonym: Physical suffering
synonym: Ache
defining citation: Adams et al., Principles of Neurology, 6th ed, p45
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
mesh uid: D010146
modified date: 2008-03-13
usage note: MeSH includes the following qualified subtypes based on the nature of the pain experienced: Burning Pain; Crushing Pain; Migratory Pain; Radiating Pain; Splitting Pain
externally sourced definition: * The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. [http://www.onelook.com/] (GO) * The stimulus-response process involving the stimulation of peripheral pain-carrying nerve fibers (e.g., C-fibers, A-delta fibers) and the transmission of impulses along peripheral nerves of the central nervous system, where the stimulus is perceived as pain. (Taber's) (NCI)
disjoint with: Proprioception
g oid: 0050967
synonym: Pain perception
disjoint with: Touch sensation
definition: An unpleasant sensation induced by noxious stimuli and generally received by specialized nerve endings (MeSH).
synonym: Nociception

Visceral sensation
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-08-22
disjoint with: Pain sensation
modified date: 2007-08-22
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
nif ID: _8.1_1.4.4
disjoint with: Temperature sensation
synonym: Visceral perception
umls cui: C1301578
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Touch sensation
disjoint with: Proprioception
externally sourced definition: The series of events required for an organism to receive a sensory temperature stimulus, convert it to a molecular signal, and recognize and characterize the signal.
subclass of: Somatic sensation

Proprioception
type: Class
umls cui: C0178811
g oid: 0019230
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Touch sensation
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-08-22
modified date: 2007-08-22
nif ID: _8.1_1.4.1
disjoint with: Visceral sensation
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
subclass of: Somatic sensation
disjoint with: Temperature sensation
externally sourced definition: * The mechanism involved in the self-regulation of posture and movement through stimuli originating in the receptors imbedded in the joints, tendons, muscles, and labyrinth. (MSH) * The series of events by which an organism senses the position, location, orientation, and movement of the body and its parts. Proprioception is mediated by proprioceptors, sensory nerve terminals found in muscles, tendons, and joint capsules, which give information concerning movements and position of the body. The receptors in the labyrinth are sometimes also considered proprioceptors. [http://www.onelook.com/, ISBN:072168677X] (GO) * proprioception is the sense of body position and movement, mediated by the labyrinth (equilibrium) and peripheral receptors in the muscles and elsewhere (limb and joint position); kinesthesia includes the latter, but not equilibrium. (CSP)
synonym: Proprioceptive sensation
umls cui: C0033499
mesh uid: D011434
disjoint with: Pain sensation

Touch sensation
type: Class
disjoint with: Visceral sensation
disjoint with: Temperature sensation
disjoint with: Proprioception
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-08-22
g oid: 0050975
synonym: Touch perception
subclass of: Somatic sensation
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
nif ID: _8.1_1.4.2
disjoint with: Pain sensation
mesh uid: D014110
umls cui: C0702221
synonym: Tactile perception
externally sourced definition: * Awareness of the qualities or characteristics of objects, substances, or surfaces by means of touch. (PSY) * Sensation or perception by which contact with objects, animate or inanimate, gives evidence as to certain qualities or characteristics. (MSH) * The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach). [GO:ai] (GO) * Touch; the faculty of touch, the sensation produced by pressure receptors in the skin. (NCI) * group of senses by which contact with objects gives evidence as to certain of their qualities, as registered by mechanoreceptors in the skin and mucous membranes. (CSP)
synonym: Tactile sensation
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
modified date: 2008-03-13

Inductive reasoning function
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-03-06
modified date: 2007-03-06
subclass of: Reasoning function

Reasoning function
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Cognitive function
modified date: 2007-03-06

Inductive reasoning activity
type: Class
temp definition: inductive reasoning is a type of reasoning in which the premises of an argument are believed to support the conclusion but do not ensure it. It is used to ascribe properties or relations to types based on tokens (i.e., on one or a small number of observations or experiences); or to formulate laws based on limited observations of recurring phenomenal patterns. Induction is used, for example, in USING SPECIFIC PROPOSITIONS such as:'this ice is cold'; 'a billiard ball moves when struck with a cue' TO INFER GENERAL PROPOSITIONS such as:'all ice is cold'; 'all billiard balls struck with a cue move.' In other words, inductive reasoning infers probable antecedents as a result of observing multiple consequents - i.e., inferring some 'b' from multiple instantiations of 'a' when 'b' entails 'a'.. (Wikipedia - BB:2007-03-05).
disjoint with: Abductive reasoning activity
created date: 2007-03-06
subclass of: Reasoning activity
disjoint with: Deductive reasoning activity
disjoint with: Moral reasoning activity
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#Wikipedia_defSource
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
modified date: 2007-03-06

Abductive reasoning activity
type: Class
disjoint with: Moral reasoning activity
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Inductive reasoning activity
temp definition: Abductive reasoning is a type of reasoning in which a hypothesis is chosen to best explain the relevant evidence - also called 'inference to the best explanation'. Abduction starts from a set of accepted facts and infers to their most likely, or best, explanations. The term abduction is also sometimes used to just mean the generation of hypotheses to explain observations or conclusions. Abductive reasoning allows inferring 'a' as an explanation of 'b'. Because of this, abduction allows the precondition 'a' of 'a entails b' to be inferred from the consequence, and, as such, such abduction is formally equivalent to the logical fallacy 'affirming the consequent.' (Wikipedia - BB:2007-03-05).
modified date: 2007-03-06
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#Wikipedia_defSource
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-03-06
disjoint with: Deductive reasoning activity
subclass of: Reasoning activity

Reasoning activity
type: Class
modified date: 2007-03-06
created date: 2007-03-06
subclass of: Behavioral activity
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Deductive reasoning activity
type: Class
created date: 2007-03-06
subclass of: Reasoning activity
disjoint with: Moral reasoning activity
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#Wikipedia_defSource
modified date: 2007-03-06
disjoint with: Abductive reasoning activity
temp definition: Deductive reasoning is a type of reasoning in which the conclusion is necessitated by, or reached from, previously known facts (the premises). If the premises are true, the conclusion must be true. In deductive reasoning, the conclusion is dependent on its premises. That is, a false premise can possibly lead to a false conclusion, and inconclusive premises will also yield an inconclusive conclusion (Wikipedia - BB:2007-03-05).
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
disjoint with: Inductive reasoning activity

Moral reasoning activity
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-03-06
disjoint with: Deductive reasoning activity
subclass of: Reasoning activity
created date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
disjoint with: Inductive reasoning activity
disjoint with: Abductive reasoning activity
temp definition: Moral reasoning is individual or collective practical reasoning about what, morally, one ought to do (Stanford Encyclopedia of Philosphy).

Semantic memory
type: Class
created date: 2007-08-22
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
externally sourced definition: Organized knowledge about words, their meanings, and their relations. (PSY)
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
umls cui: C0542312
subclass of: Memory
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
modified date: 2007-08-22

Ciliary displacement stimulus transduction
type: Class
definition: Energy transfer between some physical force and primary sensory cilia displacement which to stimulation of the neurons (BB: 2008-03-13)
disjoint with: Light stimulus transduction
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
example: otolith displacement in equilibrioception.
disjoint with: Temperature stimulus transduction
modified date: 2008-03-13
created date: 2008-03-13
disjoint with: Mechanical stimulus transduction
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Mechanical stimulus transduction

Light stimulus transduction
type: Class
modified date: 2008-03-13
subclass of: Sensory stimulus transduction
synonym: sensory detection of light stimulus
definition: The series of events in which a sensory light stimulus is received and converted into a molecular signal. [GO:ai] (GO)
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
disjoint with: Temperature stimulus transduction
g oid: 0050962
umls cui: C1655408
created date: 2008-03-13
disjoint with: Mechanical stimulus transduction
disjoint with: Chemical stimulus transduction

Temperature stimulus transduction
type: Class
disjoint with: Mechanical stimulus transduction
disjoint with: Chemical stimulus transduction
subclass of: Sensory stimulus transduction
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
definition: The series of events in which a sensory temperature stimulus is received and converted into a molecular signal. [GO:ai] (GO)
umls cui: C1659756
disjoint with: Light stimulus transduction
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
synonym: sensory transduction of temperature stimulus
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
modified date: 2008-03-13
g oid: 0050961
created date: 2008-03-13

Mechanical stimulus transduction
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
disjoint with: Temperature stimulus transduction
g oid: 0050982
umls cui: C1327507
created date: 2008-03-13
synonym: sensory detection of mechanical stimulus
disjoint with: Chemical stimulus transduction
modified date: 2008-03-13
definition: The series of events in which a sensory mechanical stimulus is received and converted into a molecular signal. [GO:ai] (GO)
subclass of: Sensory stimulus transduction
disjoint with: Light stimulus transduction

Motor system function
type: Class
disjoint with: Appetitive function
disjoint with: Communication function
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-08-22
umls cui: C0589522
subclass of: Behavioral system function
disjoint with: Cognitive function
created date: 2007-08-22
nif ID: _8.1_6
disjoint with: Nutrition function

Appetitive function
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Communication function
modified date: 2007-03-06
created date: 2007-03-06
disjoint with: Cognitive function
disjoint with: Motor system function
subclass of: Behavioral system function
temp definition: A behavioral function supporting the process of ingesting food.
disjoint with: Nutrition function
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Communication function
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
disjoint with: Cognitive function
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Behavioral system function
disjoint with: Appetitive function
created date: 2007-08-22
modified date: 2007-08-22
disjoint with: Nutrition function
disjoint with: Motor system function

Behavioral system function
type: Class
temp definition: Behavioral system functions consist of the variety of emergent operations for which the organism's nervous system is the primary enabling organ system and as such behavioral system functions can be said to inhere in the nervous system. Behavioral functions may lead to action via a physiological actuation system such as the skeleto-muscular system or give rise to actions only percieved internally by the individual in which the function inheres (BB).
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-03-06
disjoint with: Autonomic nervous system function
disjoint with: Sensory system function
subclass of: Nervous system function
modified date: 2007-03-06

Cognitive function
type: Class
nif ID: _8.1_3
example: creative function
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
editorial note: The examples are derived from the Wikipedia page on 'Mental function.' Perhaps a more narrow set of examples that specifically fit to our requirements in BIRN would be more appropriate. A more authoritative neuropsychological source should also be used, as some of these examples may be considered by neuropsychologists to be degenerate - e.g., 'belief function' is_a 'imaginative function' (BB:2007-03-05).
example: imaginative function
disjoint with: Communication function
example: volitional function
umls cui: C0392335
temp definition: Cognitive functions are a type of behavioral function giving rise to actions only percieved internally by the individual in which the function inheres, though this internal perception may ultimately give rise to an externalized action (BB).
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS
example: perceptual function
example: introspective function
example: conceptual function
example: belief function
subclass of: Behavioral system function
disjoint with: Motor system function
externally sourced definition: * Level of functioning in intellectual tasks. (PSY) * Ability to perform cognitive activity (observable entity)
disjoint with: Appetitive function
created date: 2007-03-05
example: memory function
example: reasoning function
example: emotional function
modified date: 2007-08-22
disjoint with: Nutrition function
scope note: A specific instance of engaging a cognitive function leads to the creation of a mental event distinct from the cognitive functional process itself. The event of perceiving something, for instance, is different from the perceptual process in its entirety, the overall ability to perceive things. In other words, an instance of perceiving is different from the cognitive function that makes it possible (BB:2007-03-05 - derived from Wikipedia).
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Nutrition function
type: Class
subclass of: Behavioral system function
disjoint with: Motor system function
umls cui: C1442959
externally sourced definition: Nourishment of the body with balanced food in a manner that energy, maintenance, and growth processes occur. (OMS)
disjoint with: Cognitive function
disjoint with: Appetitive function
modified date: 2007-03-06
disjoint with: Communication function
created date: 2007-03-06
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource

Visual memory
type: Class
created date: 2007-08-22
modified date: 2007-08-22
umls cui: C0542316
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Memory
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Restriction
  on property: has part
  some values from: Visual sensation
usage note: How does this related to Visual perception? Possibly not at all - really need a definition to know (BB).

Visual sensation
type: Class
created date: 2007-08-22
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
externally sourced definition: * Sight; the faculty of vision, the perception of objects by the eye. (NCI) * The act or power of sensing with the eyes. (OMS) * The sensation of sight. (MSH) * The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image. [GO:ai] (GO) * sense of sight. (CSP)
synonym: sight
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
synonym: sense of sight
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
mesh uid: D014785
synonym: vision
modified date: 2007-08-22
umls cui: C0042789
synonym: Visual perception
g oid: 0007601
subclass of: Photo sensation
nif ID: _8.1_1.5

Sensory stimulus transduction
type: Class
created date: 2008-03-13
subclass of: Disposition
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
g oid: 0007600
disjoint with: Behavioral activity
disjoint with: Sensory perception
disjoint with: Cognitive state
modified date: 2008-03-13
umls cui: C0683184
synonym: Sensation
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
editorial note: * The series of events during sensory perception in which a sensory stimulus is received and converted into a molecular signal. [GO:ai, MGI:dph] (GO) * The absorption of environmental physico-chemical energy thus altering the energy profile of specific molecular constituents in a specific cell or cells thus changing the state of the organism itself. (BB)

Chemical stimulus transduction
type: Class
g oid: 0009593
disjoint with: Light stimulus transduction
synonym: Molecule binding stimulus transduction
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2008-03-13
disjoint with: Temperature stimulus transduction
created date: 2008-03-13
definition: * The series of events in which a sensory chemical stimulus is received and converted into a molecular signal. [GO:ai] (GO) * Sensory transduction where the binding of a specific molecular species is the direct stimulus being.
umls cui: C1327496
disjoint with: Mechanical stimulus transduction
synonym: sensory detection of chemical stimulus
subclass of: Sensory stimulus transduction
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Generative verbal activity
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Verbal activity
disjoint with: Interpretive verbal activity
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
modified date: 2007-03-06
created date: 2007-03-06

Verbal activity
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
modified date: 2007-08-22
subclass of: Behavioral activity
birnlex definition: A behavioral activity employing verbal function to either generate or interpreting meaningful spoken or writen words or symbols. If generating verbal output, a motor system is invoked. If interpreting verbal input, typically a sensory system is invoked, though certain interpretive activity involves movement of the sensory organ - e.g., eye movements during reading (BB:2007-03-05).
externally sourced definition: * Includes both producing and responding to words, either written or spoken. (MSH) * both producing and responding to words, either written or spoken. (CSP)
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-03-06
umls cui: C0042530

Salty taste sensation
type: Class
g oid: 0001583
synonym: Salty taste perception
disjoint with: Sour taste sensation
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
subclass of: Taste sensation
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
externally sourced definition: The series of events required to receive a salty taste stimulus, convert it to a molecular signal, and recognize and characterize the signal.
disjoint with: Bitter taste sensation
disjoint with: Sweet taste sensation
disjoint with: Umami taste sensation
created date: 2007-08-22
modified date: 2007-08-22
umls cui: C1154611
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Sour taste sensation
type: Class
externally sourced definition: The series of events required to receive a sour taste stimulus, convert it to a molecular signal, and recognize and characterize the signal.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Umami taste sensation
created date: 2007-08-22
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
disjoint with: Salty taste sensation
subclass of: Taste sensation
modified date: 2007-08-22
g oid: 0001581
umls cui: C1154612
disjoint with: Sweet taste sensation
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
synonym: Sour taste perception
disjoint with: Bitter taste sensation

Taste sensation
type: Class
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
mesh uid: D013649
externally sourced definition: * Taste; the faculty of taste, distinguishing substances by means of the taste buds. (NCI) * The sensation or perception of certain qualities of substances put in the mouth, primarily sweet, sour, salt and bitter. (MSH) * The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells. [GO:ai, http://www.onelook.com/] (GO) * sense effected by the gustatory receptors in the tongue; primarily sweet, sour, salty and bitter. (CSP)
nif ID: _8.1_1.2.2
modified date: 2007-08-22
umls cui: C0039336
created date: 2007-08-22
subclass of: Chemical sensation
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
g oid: 0050912
synonym: Gustatory perception
disjoint with: Olfactory sensation
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
synonym: Taste perception

Bitter taste sensation
type: Class
disjoint with: Salty taste sensation
synonym: Bitter taste perception
disjoint with: Umami taste sensation
disjoint with: Sour taste sensation
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Sweet taste sensation
created date: 2007-08-22
g oid: 0001580
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
externally sourced definition: The series of events required to receive a bitter taste stimulus, convert it to a molecular signal, and recognize and characterize the signal.
subclass of: Taste sensation
modified date: 2007-08-22
umls cui: C0039336

Sweet taste sensation
type: Class
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
disjoint with: Bitter taste sensation
umls cui: C1154613
disjoint with: Salty taste sensation
synonym: Sweet taste perception
g oid: 0001582
disjoint with: Umami taste sensation
created date: 2007-08-22
subclass of: Taste sensation
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
externally sourced definition: The series of events required to receive a sweet taste stimulus, convert it to a molecular signal, and recognize and characterize the signal.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-08-22
disjoint with: Sour taste sensation

Umami taste sensation
type: Class
externally sourced definition: The series of events required to receive an umami taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. Umami taste is the savory taste of meats and other foods that are rich in glutamates.
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Bitter taste sensation
disjoint with: Salty taste sensation
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
disjoint with: Sweet taste sensation
g oid: 0046535
umls cui: C1154614
synonym: Umami taste perception
modified date: 2007-08-22
subclass of: Taste sensation
created date: 2007-08-22
disjoint with: Sour taste sensation

Locomotor activity
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
disjoint with: Skeletomotor reflex activity
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-03-06
umls cui: C0023946
subclass of: Motor activity
disjoint with: Inidividual body part movement
created date: 2007-03-06
externally sourced definition: * Movement or the ability to move from one place or another. It can refer to humans, vertebrate or invertebrate animals, and microorganisms. (MSH) * Self-propelled movement of a cell or organism from one location to another. [ZFIN:dh] (GO)
nif ID: _8.1_6.1
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource

Skeletomotor reflex activity
type: Class
disjoint with: Inidividual body part movement
temp definition: A behavioral activity expressing immediate sensory-motor integration through activation of muscular-driven process (BB:2007-03-05).
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Motor activity
disjoint with: Locomotor activity
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-03-06
created date: 2007-03-06

Inidividual body part movement
type: Class
subclass of: Motor activity
modified date: 2007-03-06
disjoint with: Locomotor activity
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Skeletomotor reflex activity
created date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Pressure stimulus transduction
type: Class
created date: 2008-03-13
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Mechanical stimulus transduction
disjoint with: Mechanical stimulus transduction
definition: This is a stimulus where the the direct physical property being sensed is the local pressure, such as with the baroreceptors in the the aortic arch and carotid sinuses of higher mammals.
modified date: 2008-03-13
disjoint with: Temperature stimulus transduction
disjoint with: Light stimulus transduction
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Saccadic eye movement
type: Class
created date: 2007-03-06
subclass of: Eye movement
temp definition: Rapid eye movement relative to an initial target
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Eye movement
type: Class
created date: 2007-03-06
modified date: 2007-03-06
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Inidividual body part movement

Implicit memory
type: Class
subclass of: Memory
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-08-22
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
umls cui: C0561768
modified date: 2007-08-22
externally sourced definition: Memory of events without specific awareness of learning or experiencing the event. (PSY)

Sensory memory
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-08-22
umls cui: C0679051
modified date: 2007-08-22
subclass of: Memory
subclass of: Restriction
  on property: has part
  some values from: Sensory perception

Recognition memory function
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
bonfire ID: BF_T0000228
subclass of: Restriction
  on property: has part
  all values from: Class
    union of: Sensory perception
    union of: Behavioral activity
    union of: Cognitive state
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-03-06
subclass of: Memory function
modified date: 2007-08-22

Cognitive state
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Sensory stimulus transduction
modified date: 2007-03-05
created date: 2006-06-01
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Maryann_Martone
disjoint with: Behavioral activity
subclass of: Disposition
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
editorial note: Describes entities related to cognitive processes. At some point, this will have to be merged with the OBR but for now I think it's best kept separate (MM).
change note: Moved under bfo:Disposition, as these are states toward which the organisms in which they inhere are disposed (BB:2007-03-05).
disjoint with: Sensory perception
change note: Moved from base of hiearchy to a subclass of bfo:realizable_entity (BB).

Memory function
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-03-06
modified date: 2007-08-22
subclass of: Restriction
  all values from: Class
    union of: Sensory perception
    union of: Behavioral activity
    union of: Cognitive state
  on property: has part
subclass of: Cognitive function
editorial note: Note the has_integral_part restriction helps to support the variety of memory types - e.g., verbal memory, motor memory, sense memory, etc.. It isn't truly correct to say a memory instance includes a behavioral activity as an integral part. It would be more correct to say a memory instance (measured through some assessment technique) ENCODES or somehow includes a link to a particular behavioral activity (BB).

Memory retrieval
type: Class
modified date: 2007-08-22
created date: 2007-08-22
umls cui: C0679061
subclass of: Memory
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Prospective memory
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-08-22
modified date: 2007-08-22
subclass of: Memory
umls cui: C0589154

Anger
type: Class
externally sourced definition: A strong emotional feeling of displeasure aroused by being interfered with, injured or threatened (MeSH).
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
umls cui: C0002957
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Jessica_Turner
created date: 2006-06-01
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#MeSH_defSource
modified date: 2007-03-05
has external source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS
subclass of: Emotion

Emotion
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
externally sourced definition: * Conceptually broad term referring to the affective aspects of human consciousness. Use a more specific term if possible. Use ANIMAL EMOTIONALITY for nonhuman subjects. (PSY) * Those affective states which can be experienced and have arousing and motivational properties. (MSH) * that aspect of consciousness devoted to affect or feeling. (CSP)
disjoint with: Memory
nif ID: _8.1_4
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
subclass of: Cognitive state
umls cui: C0013987
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Jessica_Turner
birnlex definition: A mental state that arises spontaneously rather than through conscious effort and is often accompanied by physiological changes; a feeling.
modified date: 2007-08-25
created date: 2006-06-01
synonym: affective state
umls cui: C0935620
has external source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS

Touch stimulus transduction
type: Class
disjoint with: Light stimulus transduction
example: Touch stimulus transduction
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
modified date: 2008-03-13
created date: 2008-03-13
subclass of: Mechanical stimulus transduction
disjoint with: Mechanical stimulus transduction
g oid: 0050976
definition: The series of events involved in the perception of touch in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal.
disjoint with: Temperature stimulus transduction
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Echolocation sensation
type: Class
modified date: 2008-03-13
synonym: perception of environment using reflected sound waves
synonym: echo location
definition: * An auditory orientation mechanism involving the emission of high frequency sounds which are reflected back to the emitter (animal). (MSH) * Echolocation is the method used by some animals (e.g. bats, dolphins and some whales) to determine the location of something by measuring the time it takes for an echo to return from it. These animals emit sound waves and listen for the echo, calculating the distance to the object from the time lapse between sound emission and the echo returning. [source: http://www.onelook.com/, http://www.wikipedia.org/]
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
g oid: 0050959
created date: 2008-03-13
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
umls cui: C0013529
subclass of: Sound sensation

Sound sensation
type: Class
modified date: 2008-03-13
synonym: sensory detection of sound stimulus
synonym: sensory detection of olfactory stimulus
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
definition: The series of events in which a sensory chemical stimulus is converted into a percieved senstation. (BB:2008-03-13)
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
synonym: sound perception
subclass of: Sensory perception
created date: 2008-03-13
g oid: 0050910
umls cui: C0018767

Explicit memory
type: Class
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
subclass of: Memory
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
umls cui: C0561766
externally sourced definition: Memory of events where one is also aware of learning or experiencing the event. (PSY)
created date: 2007-08-22
modified date: 2007-08-22

Olfactory stimulus transduction
type: Class
synonym: sensory detection of olfactory stimulus
modified date: 2008-03-13
synonym: sensory detection of smell stimulus
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2008-03-13
subclass of: Chemical stimulus transduction
synonym: smell stimulus transduction
g oid: 0009593
umls cui: C1327496
definition: The series of events in which a sensory chemical stimulus is received and converted into a molecular signal. [GO:ai] (GO)
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Happiness
type: Class
has external source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS
modified date: 2007-03-11
umls cui: C0018592
birnlex definition: Highly pleasant emotion characterized by outward manifestations of gratification; joy
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Jessica_Turner
subclass of: Emotion
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2006-06-01

Autobiographical memory
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Memory
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Jessica_Turner
created date: 2006-05-15
birnlex definition: Memory that involves the conscious recall or recognition of ones own life.
umls cui: C0561843
modified date: 2007-08-20

Memory acquistion
type: Class
created date: 2007-08-22
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-08-22
subclass of: Memory
scope note: Storage as opposed to recall (BB).
umls cui: C0439045

Episodic memory
type: Class
umls cui: C0589153
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Memory
modified date: 2007-08-22
created date: 2007-08-22

Discrimination activity
type: Class
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
umls cui: C0012632
externally sourced definition: * Ability to distinguish between examples vs nonexamples of a concept, based on the presence or absence of its defining attributes. (PSY) * Conceptually broad term referring to the general process of differentiation between qualities, entities, or people. Use a more specific term if possible. (PSY) * Differential response to different stimuli. (MSH)
subclass of: Restriction
  on property: has part
  some values from: Sensory perception
subclass of: Generative memory activity
modified date: 2007-03-06
usage note: Note you could create a more specific type of discrimination activity - e.g., 2 point discrimination - by declaring it as a type and specifying it has_integral_part SOME Visual Perception (BB).

Nervous system function
type: Class
temp definition: These are parts of nervous system function - i.e., functional components which inhere in some portion of the nervous system.
modified date: 2007-08-25
created date: 2007-08-25
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Function
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Behavioral process
type: Class
modified date: 2007-03-05
created date: 2006-05-15
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#BIRN_OTF
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Process

Abductive reasoning function
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Reasoning function
modified date: 2007-03-06
created date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Memory recall
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
modified date: 2007-08-22
scope note: Recall as opposed to storage (BB:2007-03-05).
created date: 2006-05-15
subclass of: Memory retrieval
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Anxiety
type: Class
umls cui: C0003467
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Jessica_Turner
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
externally sourced definition: Persistent feeling of dread, apprehension, and impending disaster (MeSH).
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#MeSH_defSource
subclass of: Emotion
modified date: 2007-03-05
has external source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS
created date: 2006-06-01

Musculoskeletal equilibrium sensation
type: Class
subclass of: Proprioception
mesh uid: D004856
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2008-03-13
externally sourced definition: A state of the body being evenly balanced in POSTURE. The biomechanical responses of the MUSCULOSKELETAL SYSTEM during standing, walking, sitting, and other movements.
created date: 2008-03-13
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#MeSH_defSource
umls cui: C1256755
synonym: postural equilibrium sensation
synonym: postural balance sense

Olfactory sensation
type: Class
externally sourced definition: * Smell; the faculty of smell, the sensation that results when olfactory receptors in the nose are stimulated by particular chemicals in gaseous form. (NCI) * The sensation or perception of scents or odors. (MSH) * The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. [GO:ai, http://www.onelook.com/] (GO) * sensation or perception of scents or odors; sense of smell. (CSP)
subclass of: Chemical sensation
disjoint with: Taste sensation
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
g oid: 0007608
mesh uid: D012903
created date: 2007-08-22
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
nif ID: _8.1_1.2.1
umls cui: C0037361
modified date: 2007-08-22
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
synonym: Olfactory perception
synonym: olfaction

Verbal function
type: Class
subclass of: Cognitive function
modified date: 2007-03-06
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-03-06

Eidetic memory
type: Class
created date: 2007-08-22
synonym: Photographic memory
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
umls cui: C0013727
externally sourced definition: * A visual image which is recalled in accurate detail. It is a sort of projection of an image on a mental screen. (MSH) * Clear and detailed memory for objects or events perceived, usually visually. (PSY)
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
subclass of: Visual memory
modified date: 2007-08-22

Verbal writing
type: Class
created date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
modified date: 2007-03-06
disjoint with: Drawing
subclass of: Generative verbal activity
disjoint with: Verbal speaking
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Drawing
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
modified date: 2007-03-06
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Verbal writing
created date: 2007-03-06
subclass of: Generative verbal activity
disjoint with: Verbal speaking

Verbal speaking
type: Class
modified date: 2007-03-06
disjoint with: Drawing
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
disjoint with: Verbal writing
created date: 2007-03-06
subclass of: Generative verbal activity
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Working memory
type: Class
bonfire ID: BF_T0000218
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
scope note: How would this entity related to short-term and long-term memory (BB).
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Jessica_Turner
created date: 2006-05-15
modified date: 2007-08-22
birnlex definition: Memory that involves the conscious encoding, storing and retrieving information encountered recently
subclass of: Memory

Working memory
type: Class
birnlex definition: Memory that involves the conscious encoding, storing and retrieving information encountered recently
modified date: 2007-08-22
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Jessica_Turner
disjoint with: Autobiographical memory
bonfire ID: BF_T0000218
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2006-05-15
subclass of: Requested recall
disjoint with: Recognition memory

Autobiographical memory
type: Class
created date: 2006-05-15
birnlex definition: Memory that involves the conscious recall or recognition of one's own life.
disjoint with: Recognition memory
modified date: 2007-08-22
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Requested recall
umls cui: C0561843
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Jessica_Turner
disjoint with: Working memory

Requested recall
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
disjoint with: Free recall
subclass of: Memory recall
created date: 2007-03-05
scope note: Requested as opposed to free (BB:2007-03-05).
modified date: 2007-08-22

Recognition memory
type: Class
has external source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#MeSH-UMLS
subclass of: Requested recall
externally sourced definition: The memory that someone or something present has been previously encountered. (MeSH)
disjoint with: Autobiographical memory
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
disjoint with: Working memory
created date: 2006-05-15
umls cui: C0524637
modified date: 2007-08-22

Lateralized activity
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
editorial note: Laterality may actually be most effectively expressed as a measured quality via PATO (BB:2007-03-05).
modified date: 2007-03-06
birnlex definition: A behavioral activity expressing a behavioral function that is differentially supported across the two cerebrain hemispheres in the vertebrate brain (BB:2007-03-05).
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-03-06
subclass of: Behavioral activity

Electroception stimulus transduction
type: Class
disjoint with: Mechanical stimulus transduction
definition: The series of events during electroception in which a sensory electrical stimulus is received by a cell and converted into a molecular signal.
modified date: 2008-03-13
subclass of: Sensory stimulus transduction
disjoint with: Light stimulus transduction
synonym: electroception, sensory transduction
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
disjoint with: Temperature stimulus transduction
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
umls cui: C1327499
created date: 2008-03-13
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
g oid: 0050964

Verbal memory
type: Class
umls cui: C0561770
modified date: 2007-08-22
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
usage note: How does this related to Verbal behavioral function? Possibly not at all - really need a definition to know (BB).
created date: 2007-08-22
subclass of: Memory

Free recall
type: Class
birnlex definition: The cognitive process of remembering/recollecting previously learned material without aid of any external cues.
disjoint with: Requested recall
created date: 2006-05-15
bonfire ID: BF_T0000231
modified date: 2007-08-22
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Memory recall

Heat sensation
type: Class
created date: 2008-03-13
subclass of: Temperature sensation
definition: The series of events in which a sensory heat stimulus is converted into a percieved senstation. (BB:2008-03-13)
synonym: hot sense
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2008-03-13
umls cui: C0234193

Kinesthetic sensation
type: Class
umls cui: C0178811
synonym: kinesthesia
subclass of: Proprioception
mesh uid: D007699
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
externally sourced definition: The sense of body position and movement, mediated by peripheral receptors in the muscles and elsewhere (limb and joint position) (CSP)
modified date: 2007-08-25
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-08-25

Slow pain sensation
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-08-22
synonym: Slow Pain perception
umls cui: C1623032
modified date: 2007-08-22
subclass of: Pain sensation
externally sourced definition: The series of events required for an organism to receive a slow pain stimulus, convert it to a molecular signal, and recognize and characterize the signal. Slow pain is often subjectively described as an aching or throbbing pain; in humans, the signals from a slow pain stimulus are perceived and relayed along unmyelinated C fibers to the central nervous system, reaching their target in about 1 second. Slow pain is often associated with tissue destruction. [http://www.people.vcu.edu/~mikuleck/ssspain/, http://www.spine-health.com/]
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Appetitive activity
type: Class
example: chewing
synonym: eating
example: swallowing
subclass of: Restriction
  on property: has part
  some values from: Sensory perception
temp definition: A behavioral activity expressed while ingesting food.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
example: masticating
modified date: 2007-03-06
subclass of: Behavioral activity
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-03-06

Sadness
type: Class
modified date: 2007-03-05
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Emotion
umls cui: C0233486
created date: 2006-06-01
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#BIRN_OTF
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
editorial note: In what way is this related to Happiness? Is there in fact a single underlying Cognitive_entity for which Happiness and Sadness are just either end of the quality gamut describing that entity as experienced by an individual (BB)? Can you experience both Happiness and Sadness simultaneously (BB)?

Procedural memory
type: Class
synonym: Motor memory
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
synonym: Practice memory
subclass of: Restriction
  on property: has part
  some values from: Behavioral activity
modified date: 2007-08-22
created date: 2007-08-22
umls cui: C0561782
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Memory

Bicarbonate stimulus transduction
type: Class
modified date: 2008-03-13
definition: A sensory transduction event whereby chemoreceptors in the carotid body of higher mammals detect the amount of plasma bicarbonate communicating this signal to medullary neurons involved in control of respiratory rate. Higher pH derives primarily from higher plasma pCO2. The medullary neurons increase respiratory rate in response to a rise in pH, so as to vent more CO2 and thereby decrease pH back toward neutral (BB: 2008-03-13)
synonym: pH stimulus transduction
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2008-03-13
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Molecule flow stimulus transduction

Molecule flow stimulus transduction
type: Class
disjoint with: Mechanical stimulus transduction
modified date: 2008-03-13
definition: This is a stimulus where the flow of a specific molecular species is the direct event being detected
subclass of: Sensory stimulus transduction
disjoint with: Light stimulus transduction
example: Bicarbonate concentration stimulus
disjoint with: Temperature stimulus transduction
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2008-03-13
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Discrimination function
type: Class
subclass of: Cognitive function
created date: 2007-03-06
modified date: 2007-03-06
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Requested recall
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-08-22
subclass of: Memory function
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-08-22

Oculomotor function
type: Class
modified date: 2007-08-22
umls cui: C0683208
created date: 2007-08-22
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Motor system function
nif ID: _8.1_6.2
umls cui: C0589522
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated

Remote memory
type: Class
modified date: 2007-08-22
created date: 2007-08-22
synonym: Memory of past events
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Memory
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
umls cui: C0233793

Item recognition activity
type: Class
modified date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Discrimination activity
created date: 2007-03-06

Working memory function
type: Class
modified date: 2007-08-22
bonfire ID: BF_T0000218
subclass of: Restriction
  on property: has part
  all values from: Class
    union of: Sensory perception
    union of: Behavioral activity
    union of: Cognitive state
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
subclass of: Memory function
created date: 2007-03-06

Locomotor function
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Motor system function
modified date: 2007-03-06
created date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
temp definition: A behavioral function enabling an entity to alter its location under the power of its own motive force (BB:2007-03-05).
nif ID: _8.1_6.1

Smoking
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-03-06
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
subclass of: Behavioral activity
umls cui: C0453996
modified date: 2007-08-22
externally sourced definition: The act of puffing and/or inhaling smoke from a lit cigarette, cigar, or pipe. (NCI)
synonym: Tobacco smoking behavior
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Fear
type: Class
has external source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS
umls cui: C0015726
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Jessica_Turner
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
externally sourced definition: The affective response to an actual current external danger which subsides with the elimination of the threatening condition. (MeSH)
subclass of: Emotion
created date: 2006-06-01
externally sourced definition: Unpleasant but normal emotional response to genuine external danger or threats; compare with ANXIETY and CLINICAL ANXIETY. (CSP)
modified date: 2007-03-05

Iconic memory
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-08-22
scope note: How would this entity related to short-term and long-term memory (BB).
subclass of: Memory
umls cui: C0871777
externally sourced definition: Brief sensory memory, usually lasting only fractions of a second. (PSY)
modified date: 2007-08-22
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#UMLS_defSource
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Free recall
type: Class
modified date: 2006-10-11
created date: 2006-06-01
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Memory function

Memory retention
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-08-22
umls cui: C0598851
subclass of: Memory function
created date: 2007-08-22
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Fluid-coupled ciliary displacement stimulus transduction
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2008-03-13
example: endolymph-based displacement of cochlear hair cell cilia in the mammalian ear.
disjoint with: Mechanical stimulus transduction
definition: Energy transfer between some physical force and a solid object which is coupled to primary sensory cilia and whose displacement leads to stimulation of the neurons (BB: 2008-03-13)
subclass of: Ciliary displacement stimulus transduction
disjoint with: Light stimulus transduction
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
modified date: 2008-03-13
disjoint with: Temperature stimulus transduction

Accelleration stimulus transduction
type: Class
disjoint with: Light stimulus transduction
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
g oid: 0050973
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
modified date: 2008-03-13
umls cui: C1327475
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2008-03-13
subclass of: Solid object-coupled ciliary displacement stimulus transduction
disjoint with: Mechanical stimulus transduction
definition: The series of events involved in equilibrioception in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. During equilibrioception, mechanical stimuli may be in the form of input from pressure receptors or from the labyrinth system of the inner ears.
synonym: equilibrioception, sensory transduction of mechanical stimulus
disjoint with: Temperature stimulus transduction

Solid object-coupled ciliary displacement stimulus transduction
type: Class
disjoint with: Mechanical stimulus transduction
disjoint with: Temperature stimulus transduction
disjoint with: Light stimulus transduction
example: otolith displacement in equilibrioception.
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
definition: Energy transfer between some physical force and a solid object which is coupled to primary sensory cilia and whose displacement leads to stimulation of the neurons (BB: 2008-03-13)
modified date: 2008-03-13
created date: 2008-03-13
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Ciliary displacement stimulus transduction

Magnetic field stimulus transduction
type: Class
disjoint with: Temperature stimulus transduction
modified date: 2008-03-13
disjoint with: Light stimulus transduction
subclass of: Solid object-coupled ciliary displacement stimulus transduction
umls cui: C1327483
synonym: magnetoception, sensory transduction of mechanical stimulus
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2008-03-13
definition: The series of events involved in magnetoception in which a sensory mechanical stimulus is received by a cell and converted into a molecular signal. The stimulus is in the form of torque on particles such as magnetite which respond to a magnetic field.
g oid: 0050971
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
disjoint with: Mechanical stimulus transduction
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource

Deductive reasoning function
type: Class
created date: 2007-03-06
modified date: 2007-03-06
subclass of: Reasoning function
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Topographical memory
type: Class
umls cui: C0814087
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
modified date: 2007-08-22
created date: 2007-08-22
subclass of: Spatial memory
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Fast pain sensation
type: Class
modified date: 2007-08-22
has definition source: http://purl.org/nbirn/birnlex/ontology/annotation/OBO_annotation_properties.owl#GO_defSource
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
externally sourced definition: The series of events required for an organism to receive a fast pain stimulus, convert it to a molecular signal, and recognize and characterize the signal. Fast pain is often subjectively described as a sharp or stabbing pain; in humans, the signals from a fast pain stimulus are perceived and relayed along myelinated A-delta fibers to the central nervous system, reaching their target in about 0.1 seconds. [http://www.spine-health.com/]
synonym: Fast Pain perception
subclass of: Pain sensation
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
umls cui: C1622491
created date: 2007-08-22

Gustatory stimulus transduction
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
definition: The series of events in which a sensory chemical stimulus is received and converted into a molecular signal. [GO:ai] (GO)
created date: 2008-03-13
umls cui: C1327496
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Chemical stimulus transduction
synonym: sensory detection of gustatory stimulus
synonym: taste stimulus transduction
synonym: sensory detection of taste stimulus
modified date: 2008-03-13
g oid: 0050911

Memory consolidation
type: Class
subclass of: Memory
umls cui: C0679057
modified date: 2007-08-22
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated
created date: 2007-08-22
scope note: As opposed to simple storage and recall (BB).
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Skeletomotor reflex function
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-03-06
subclass of: Motor system function
temp definition: A behavioral function supporting immediate sensory-motor integration with minimal nervous system processing (BB:2007-03-05).
created date: 2007-03-06
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#uncurated