BIRNLex-OBI-proxy
type: Ontology
editorial note: ID use: 11000 - 11048
contributor: Jessica Turner
contributor: Carol Bean
modified date: 2008-02-21
version info: 1.3.1
contributor: Maryann Martone
contributor: Christine Fennema-Notestine
default language: en
creator: The BIRN Ontology Task Force
editorial note: next ID: birnlex_11049
contributor: Jeff Grethe
definition: The BIRN Project lexicon uses this file as a temporary proxy for classes from the Ontology of Biomedical Investigation (OBI). These classes will be replaced by their OBI equivalents, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
contributor: Bill Bug
editorial note: Using birnlex IDs starting with 11000.
contributor: Amarnath Gupta
subject: The BIRN project lexicon
created date: 2007-10-05
contributor: David Kennedy
change note: 2008-02-21 (BB): Updated the sham control role classes.

Sham treatment
type: Class
created date: 2008-02-21
subclass of: Reference treatment
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
birnlex definition: A subject group treatment identical to the experimental treatment but without the active agent under study.
modified date: 2008-02-21
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#Sham_treatment
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Reference treatment
type: Class
modified date: 2008-02-21
subclass of: Reference
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#Reference_treatment
created date: 2008-02-21
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Software application
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05
synonym: software program
synonym: software resource
synonym: Software application
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-10-05
external source id: OBI_0000222
nif ID: _1_2
subclass of: Digital entity
definition: Binary executable is a digital entity consisting of the binary representation of machine instructions of a specific processor or they may be binary pseudocode for a virtual machine. A non-source executable file is also called an object program. It is assumed that the binary executable file contains properly-formatted computer instructions. (derived from Wikipedia, Nov 1, 2007)
label: Binary executable
synonym: program
modified date: December 15, 2008
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_351

Digital entity
type: Class
definition: A digital entity is an information entity which is a collection of bits that can be interpreted by a computer. Two digital entities are the same if they are bitwise identical. (OBI)
created date: 2007-10-05
modified date: December 15, 2008
modified date: 2007-10-05
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_306
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
subclass of: GenericallyDependentContinuant
external source id: OBI_0000261
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
comment: OBI has this as a child of "non realizable information entity"; we may need to update the entire hierarchy (Maryann Martone).

Microarray platform
type: Class
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
created date: 2007-10-05
modified date: 2007-10-05
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
nif ID: _7_5.1
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_52
subclass of: Platform

Platform
type: Class
modified date: 2007-10-05
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_50
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-10-05
subclass of: ObjectAggregate

Report
type: Class
nif ID: _7_12
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_322
subclass of: Narrative object
created date: 2007-10-05
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
modified date: 2007-10-05

Narrative object
type: Class
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_300
created date: 2007-10-05
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-10-05
subclass of: Information content entity
nif ID: _7_12
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Planned process
type: Class
modified date: 2007-10-05
subclass of: Process
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_600062
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05

Non-realizable information entity
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: GenericallyDependentContinuant
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_295
created date: 2007-10-05
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
modified date: 2007-10-05

Placebo treatment
type: Class
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#Placebo_treatment
modified date: 2008-02-21
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Sham treatment
created date: 2008-02-21
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.

Reporter role
type: Class
modified date: 2007-10-05
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Reagent role
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_289
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-10-05

Reagent role
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-10-05
created date: 2007-10-05
nif ID: _1_3.2
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_328
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
subclass of: Role

Investigator
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Investigation administration role
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
created date: 2007-10-05
modified date: 2007-10-05
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_288
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Investigation administration role
type: Class
created date: 2007-10-05
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-10-05
subclass of: Role
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_176

Source code
type: Class
has definition source: OBI
definition: A source code module is an information content entity that specifies, using a programming language, some algorithm.
comment: We need to have this in there somewhere, but it looks like OBI has something equivalent "source code module"; they have it classified as an information content entity, so I placed it here. (Maryann Martone)
external source id: OBI_0000039
created date: December 15, 2008
subclass of: Information entity

Information entity
type: Class
subclass of: GenericallyDependentContinuant
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_344
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-10-05
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.

Negative control role
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
modified date: 2008-02-21
is replaced by class: http://purl.org/nbirn/birnlex/ontology/BIRNLex-OBI-proxy.owl#birnlex_11045
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_173
subclass of: birnlex retired class
created date: 2007-10-05
has former parent class: http://purl.org/nbirn/birnlex/ontology/BIRNLex-OBI-proxy.owl#birnlex_11017
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.

Protocol application
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05
subclass of: Planned process
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_69
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-10-05

Assay
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_70
created date: 2007-10-05
subclass of: Protocol application
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
modified date: 2007-10-05
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Cardinal part of instrument
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-10-05
modified date: 2007-10-05
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_36
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
subclass of: Artefact object

Artefact object
type: Class
created date: 2007-10-05
modified date: 2007-10-05
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_47
subclass of: Object
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Detector role
type: Class
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_323
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05
subclass of: Reagent role
modified date: 2007-10-05

Quantitative value
type: Class
modified date: 2007-10-05
created date: 2007-10-05
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_147
subclass of: Value
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Value
type: Class
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_18
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Data object
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
modified date: 2007-10-05
created date: 2007-10-05

Reference
type: Class
created date: 2008-02-21
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2008-02-21
subclass of: Role
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#Reference
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.

Vehicle control treatment
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Sham treatment
created date: 2008-02-21
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
modified date: 2008-02-21
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#Vehicle_control_treatment

Image
type: Class
created date: 2007-10-05
modified date: 2007-10-05
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_325
subclass of: Data object
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Data object
type: Class
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-10-05
subclass of: Information content entity
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_305

Disease
type: Class
modified date: 2007-10-05
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_155
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
nif ID: _8.3
created date: 2007-10-05
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
subclass of: Disposition

Protocol
type: Class
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-10-05
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_272
subclass of: Information entity
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.

Comment
type: Class
synonym: Note
created date: 2007-10-10
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
subclass of: Narrative object
nif ID: _4_6.3
modified date: 2007-10-10
nif ID: _7_12
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Cell line
type: Class
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
created date: 2007-10-05
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_129
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-10-05
nif ID: _1_3.3
subclass of: Entity of organismal origin
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Entity of organismal origin
type: Class
nif ID: _1_3.5
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: birnlex 5
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
created date: 2007-10-05
modified date: 2007-10-05
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_133

Journal article
type: Class
modified date: 2007-10-05
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_275
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
created date: 2007-10-05
subclass of: Narrative object

Data transformation
type: Class
modified date: 2007-10-05
subclass of: Protocol application
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_95
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Device
type: Class
modified date: 2007-10-05
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_400002
subclass of: Artefact object
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Role in protocol application
type: Class
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_343
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Role
modified date: 2008-02-21

Clinical finding
type: Class
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_286
created date: 2007-10-05
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
nif ID: _7_12.1
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Narrative object
modified date: 2007-10-05

Information content entity
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_342
created date: 2007-10-05
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
modified date: 2007-10-05
subclass of: Non-realizable information entity
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Material transformation
type: Class
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
subclass of: Protocol application
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_94
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05
modified date: 2007-10-05

Imaging assay
type: Class
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2007-10-05
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_185
subclass of: Assay

Instrument
type: Class
subclass of: Device
created date: 2007-10-05
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_400003
modified date: 2007-10-05
nif ID: _1_3.1
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Data set
type: Class
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_43
created date: 2007-10-05
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
modified date: 2007-10-05
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Data object
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug

Investigation design
type: Class
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_335
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Information entity
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
modified date: 2007-10-05
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
created date: 2007-10-05

Liquid chromatography mass spectrometry platform
type: Class
subclass of: Platform
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_51
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-10-05
modified date: 2007-10-05
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary

Control role
type: Class
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
is replaced by class: http://purl.org/nbirn/birnlex/ontology/BIRNLex-OBI-proxy.owl#birnlex_11044
subclass of: birnlex retired class
has former parent class: http://purl.org/nbirn/birnlex/ontology/BIRNLex-OBI-proxy.owl#birnlex_11016
modified date: 2008-02-21
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
created date: 2007-10-05
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_171

Algorithm
type: Class
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_270
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
subclass of: Information entity
change note: Definition and defining source has been added.
modified date: December 15, 2008
definition: An algorithm is a plan which describes inputs, output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata.
created date: 2007-10-05
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
modified date: 2007-10-05
has definition source: OBI

Mock surgery
type: Class
created date: 2008-02-21
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
synonym: Sham surgery
subclass of: Sham treatment
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
modified date: 2008-02-21
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#Mock_surgery

Investigation record
type: Class
has curation status: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#graph_position_temporary
subclass of: Report
created date: 2007-10-05
editorial note: This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege.
modified date: 2007-10-05
has birnlex curator: http://purl.org/nbirn/birnlex/ontology/annotation/BIRNLex_annotation_properties.owl#Bill_Bug
external source URI: http://obi.sourceforge.net/ontology/OBI.owl#OBI_46