synonym_type
disjoint with: Nothing
subclass of: Thing
type: Class

synonym
disjoint with: Nothing
subclass of: Thing
type: Class
comment: we are forced to use the n-ary relation pattern in OWL1.0. For OWL2 we may make this a direct axiom between a class and the string
has_definition: An instance of synonym usage. synonym instances are linked to classes via oboInOwl:has*Synonym properties

obsolete_property
sub property of: topObjectProperty
property disjoint with: bottomObjectProperty
type: ObjectProperty
comment: Note that this is not a metaclass
has_definition: pseudo-property. in the oboInOwl translation, all obsolete relations are subProperties of this class

database_cross_reference
disjoint with: Nothing
subclass of: Thing
type: Class

obsolete_class
disjoint with: Nothing
subclass of: Thing
type: Class
has_definition: pseudo-class. in the oboInOwl translation, all obsolete classes are subclasses of this class. Note that this is not a metaclass

subset
disjoint with: Nothing
subclass of: Thing
type: Class
has_definition: A grouping of terms from an ontology or ontologies. Note that this is not a metaclass - classes are linked to subsets via oboInOwl:inSubset
has_related_synonym: view
has_related_synonym: partition
has_narrow_synonym: slim
has_narrow_synonym: GO-slim
has_dbxref: oboFormat:subsetdef

definition
disjoint with: Nothing
subclass of: Thing
type: Class
comment: we are forced to use the n-ary relation pattern in OWL1.0. For OWL2 we may make this a direct axiom between a class and the string
has_definition: The textual definition of the current term. There must be zero or one instances of this tag per term description
has_dbxref: URL:http://www.obofoundry.org/wiki/index.php/Definitions

oboFormat:subsetdef
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_subsetdef

oboFormat:subset
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_subset

oboFormat:broad_synonym
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_broad_synonym

The textual definition of the current term. There must be zero or one instances of this tag per term description
type: definition
has_dbxref: oboInOwl:cjm

A relation between a class and an OBO namespace string. OBO namespaces are to be distinguished from IDspaces; for example, biological_process is a namespace, GO is an idspace.
type: definition
has_dbxref: oboInOwl:GOC

has_synonym_type
type: AnnotationProperty
has_dbxref: URL:http://www.geneontology.org/GO.usage.shtml#type

has_narrow_synonym
type: AnnotationProperty
sub property of: has_synonym
has_definition: An alias in which the alias is narrower than the primary class name. Example: pyrimidine-dimer repair by photolyase is a narrow synonym of photoreactive repair
has_dbxref: oboFormat:narrow_synonym

has_version
type: AnnotationProperty
has_dbxref: oboFormat:version

This annotation property groups all subsets declared in the ontology
type: definition
has_dbxref: oboInOwl:GOC

has_related_synonym
type: AnnotationProperty
sub property of: has_synonym
has_definition: http://lodlaundromat.org/.well-known/genid/samples/pellet///class//0ecf15007b9ec5302ebd128738c89a7a/d13d27ab493afccf38011b2b53010821#44
has_dbxref: oboFormat:related_synonym

An alias in which the alias exhibits true synonymy. Example: ornithine cycle is an exact synonym of urea cycle
type: definition
has_dbxref: oboInOwl:GOC

oboInOwl:GOC
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_GOC

Gives a term which may be an appropriate substitute for an obsolete term, but needs to be looked at carefully by a human expert before the replacement is done
type: definition
has_dbxref: oboInOwl:cjm

has_URI
type: AnnotationProperty

A grouping of terms from an ontology or ontologies. Note that this is not a metaclass - classes are linked to subsets via oboInOwl:inSubset
type: definition
has_dbxref: oboInOwl:cjm

has_definition
type: AnnotationProperty
comment: we are forced to use the n-ary relation pattern in OWL1.0. For OWL2 we may make this a direct axiom between a class and the string
has_definition: a relation between a class and an instance of a oboInOwl:Definition
has_dbxref: oboFormat:def

GO-slim
type: synonym

oboInOwl:cjm
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_cjm

subset_property
type: AnnotationProperty
has_definition: This annotation property groups all subsets declared in the ontology

oboInOwl:GOC
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_GOC

oboFormat:narrow_synonym
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_narrow_synonym

is_cyclic
type: AnnotationProperty
has_definition: http://lodlaundromat.org/.well-known/genid/samples/pellet///class//0ecf15007b9ec5302ebd128738c89a7a/d13d27ab493afccf38011b2b53010821#58
has_dbxref: oboFormat:is_cyclic

has_subset
type: AnnotationProperty
has_definition: relation between an ontology and a oboInOwl:Subset, indicating classes in the ontology belong to the subset

oboFormat:def
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_def

http://lodlaundromat.org/.well-known/genid/samples/pellet///class//0ecf15007b9ec5302ebd128738c89a7a/d13d27ab493afccf38011b2b53010821#44
type: definition
label: An alias in which the alias is related the primary class name, but not necessarily broader or narrower. Example: cytochrome bc1 complex is a related synonym of ubiquinol-cytochrome-c reductase activity; virulence is a related synonym of pathogenesis
has_dbxref: oboInOwl:GOC

oboInOwl:cjm
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_cjm

oboFormat:saved_by
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_saved_by

replaced_by
type: AnnotationProperty
has_definition: http://lodlaundromat.org/.well-known/genid/samples/pellet///class//0ecf15007b9ec5302ebd128738c89a7a/d13d27ab493afccf38011b2b53010821#54
has_dbxref: oboFormat:replaced_by

a relation between a class and an instance of a oboInOwl:Definition
type: definition
has_dbxref: oboInOwl:cjm

oboInOwl:cjm
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_cjm

slim
type: synonym

relation between a class and a oboInOwl:Subset, indicating the class belongs (is a member of) the subset
type: definition
has_dbxref: oboInOwl:cjm

An alias in which the alias is broader than the primary class name. Example: cell division is a broad synonym of cytokinesis
type: definition
has_dbxref: oboInOwl:GOC

oboInOwl:GOC
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_GOC

has_obo_namespace
type: AnnotationProperty
has_definition: A relation between a class and an OBO namespace string. OBO namespaces are to be distinguished from IDspaces; for example, biological_process is a namespace, GO is an idspace.
has_dbxref: oboFormat:namespace

in_subset
type: AnnotationProperty
has_definition: relation between a class and a oboInOwl:Subset, indicating the class belongs (is a member of) the subset
has_dbxref: oboFormat:subset

URL:http://www.geneontology.org/GO.usage.shtml#type
type: database_cross_reference
has_URI: http://www.geneontology.org/GO.usage.shtml#type

consider
type: AnnotationProperty
has_definition: Gives a term which may be an appropriate substitute for an obsolete term, but needs to be looked at carefully by a human expert before the replacement is done
has_dbxref: oboFormat:consider

oboInOwl
type: Ontology
comment: OBO Format metamodel. This meta-ontology is self-describing. OBO metamodel properties are described using OBO metamodel properties
comment: This is an OWL translation of an ontology whose native representational form isobo. The translation was performed using the oboInOwl xslt library. For details, see http://www.berkeleybop.org/obo-conv.cgi

oboInOwl:cjm
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_cjm

oboFormat:synonym
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_synonym

has_synonym
type: AnnotationProperty
comment: Note that this should be a super-property of hasRelatedSynonym, hasExactSynonym etc; however, we cannot state this and remain in OWL-DL
has_definition: A relation between a class and an alias term.
has_dbxref: oboFormat:synonym

pseudo-property. in the oboInOwl translation, all obsolete relations are subProperties of this class
type: definition
has_dbxref: oboInOwl:cjm

oboFormat:replaced_by
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_replaced_by

has_exact_synonym
type: AnnotationProperty
sub property of: has_synonym
has_definition: An alias in which the alias exhibits true synonymy. Example: ornithine cycle is an exact synonym of urea cycle
has_dbxref: oboFormat:exact_synonym

oboFormat:default-namespace
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_default-namespace

pseudo-class. in the oboInOwl translation, all obsolete classes are subclasses of this class. Note that this is not a metaclass
type: definition
has_dbxref: oboInOwl:cjm

has_dbxref
type: AnnotationProperty
has_dbxref: oboFormat:xref

oboFormat:version
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_version

oboFormat:alt_id
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_alt_id

oboInOwl:GOC
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_GOC

An alias in which the alias is narrower than the primary class name. Example: pyrimidine-dimer repair by photolyase is a narrow synonym of photoreactive repair
type: definition
has_dbxref: oboInOwl:GOC

oboInOwl:cjm
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_cjm

partition
type: synonym

oboInOwl:GOC
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_GOC

has_default_namespace
type: AnnotationProperty
has_dbxref: oboFormat:default-namespace

oboInOwl:cjm
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_cjm

oboInOwl:cjm
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_cjm

oboFormat:xref
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_xref

URL:http://www.obofoundry.org/wiki/index.php/Definitions
type: database_cross_reference
has_URI: http://www.obofoundry.org/wiki/index.php/Definitions

has_broad_synonym
type: AnnotationProperty
sub property of: has_synonym
has_definition: An alias in which the alias is broader than the primary class name. Example: cell division is a broad synonym of cytokinesis
has_dbxref: oboFormat:broad_synonym

oboInOwl:cjm
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_cjm

This annotation property groups all synonym types declared in the ontology
type: definition
has_dbxref: oboInOwl:GOC

oboFormat:exact_synonym
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_exact_synonym

relation between an ontology and a oboInOwl:Subset, indicating classes in the ontology belong to the subset
type: definition
has_dbxref: oboInOwl:cjm

oboFormat:consider
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_consider

view
type: synonym

synonym_type_property
type: AnnotationProperty
has_definition: This annotation property groups all synonym types declared in the ontology

A relation between a class and an alias term.
type: definition
has_dbxref: oboInOwl:GOC

saved_by
type: AnnotationProperty
has_dbxref: oboFormat:saved_by

An instance of synonym usage. synonym instances are linked to classes via oboInOwl:has*Synonym properties
type: definition
has_dbxref: oboInOwl:cjm

http://lodlaundromat.org/.well-known/genid/samples/pellet///class//0ecf15007b9ec5302ebd128738c89a7a/d13d27ab493afccf38011b2b53010821#54
type: definition
label: Gives a term which replaces an obsolete term. The value is the id of the replacement term. The value of this tag can safely be used to automatically reassign links to an obsolete term. The replaced_by tag may only be specified for obsolete terms. A single obsolete term may have more than one replaced_by tag. This tag can be used in conjunction with the consider tag.
has_dbxref: oboInOwl:cjm

oboFormat:date
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_date

oboInOwl:cjm
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_cjm

oboInOwl:GOC
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_GOC

An alternative identifier for this class; should follow ID syntax. These can result from class merges
type: definition
has_dbxref: oboInOwl:cjm

has_date
type: AnnotationProperty
has_dbxref: oboFormat:date

oboInOwl:GOC
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_GOC

oboInOwl:GOC
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_GOC

oboFormat:related_synonym
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_related_synonym

oboInOwl:cjm
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_cjm

oboFormat:is_cyclic
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_is_cyclic

oboInOwl:cjm
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboInOwl#oboInOwl_cjm

has_alternative_id
type: AnnotationProperty
has_definition: An alternative identifier for this class; should follow ID syntax. These can result from class merges
has_dbxref: oboFormat:alt_id

oboFormat:namespace
type: database_cross_reference
has_URI: http://purl.org/obo/owl/oboFormat#oboFormat_namespace